karius bioinformatic pipeline (Karius Inc)

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Karius Inc karius bioinformatic pipeline
Karius Bioinformatic Pipeline, supplied by Karius Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/karius+bioinformatics+pipeline/bioinformatics+karius+pipeline/pmc12892564-251-6-6
Average 86 stars, based on 1 article reviews

karius bioinformatic pipeline - by Bioz Stars, 2026-10

86/100 stars

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Sequencing:

Article Title: Comparison of Blood-Based Shotgun and Targeted Metagenomic Sequencing for Microbiological Diagnosis of Infective Endocarditis
Article Snippet: .. Sequencing results were run through the Karius bioinformatics pipeline (version 3.11) to reduce human cross-reactivity calls and align microbial sequences to a curated database of microbe assemblies. ..

Article Title: Metagenomic Next-Generation Sequencing of Plasma for Diagnosis of COVID-19-Associated Pulmonary Aspergillosis
Article Snippet: .. Once sequenced, the results are run through the Karius bioinformatics pipeline (version 3.11), which is responsible for mapping sequencing data to a curated database of genomic references, estimating the concentration for each of the detected microbes, and the applications of a series of quality control tests as listed above. ..

Article Title: Plasma Microbial Cell-Free DNA Sequencing for Pathogen Detection and Quantification in Children With Musculoskeletal Infections.
Article Snippet: Journal of the Pediatric Infectious Diseases Society 2024;13(3):211–219 © The Author(s) 2024.. Published by Oxford University Press on behalf of The Journal of the Pediatric Infectious Diseases Society.. All rights reserved.

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Article Title: Comparison of Blood-Based Shotgun and Targeted Metagenomic Sequencing for Microbiological Diagnosis of Infective Endocarditis
Article Snippet: For samples in which S. aureus was detected, the Karius bioinformatics pipeline identified mcfDNA fragments arising from SCC mec , a genetic element associated with methicillin resistance.

Review